- Hannah Swensen series
- Chocolate Chip Cookie Murder (2000)
- Strawberry Shortcake Murder (2001)
- Blueberry Muffin Murder (2002)
- Lemon Meringue Pie Murder (2003)
- Fudge Cupcake Murder (2004)
- Sugar Cookie Murder (2004)
- Peach Cobbler Murder (2005)
- Cherry Cheesecake Murder (2006)
- Key Lime Pie Murder (2007)
- Carrot Cake Murder (2008)
- Cream Puff Murder (2009)
- Plum Pudding Murder (October 2009)
- Apple Turnover Murder (February 2010)
- Gingerbread Cookie Murder (October 2010)
- Devil's Food Cake Murder (February 2011)
Joanne Fluke also published 2 novellas called "Candy Cane Murder" and "Gingerbread Cookie Murder". The 2007 and 2010 books include three stories; the other pieces were by Laura Levine and Leslie Meier.
She has also written some 30 non-Swensen books including
- The Stepchild (1980)
- The Other Child (1983)
- Winter Chill (1984)
- Cold Judgement (1985)
- Vengeance is Mine (1986)
- Video Kill (1989)
- Final Appeal (1989)
- Dead Giveaway (1990)
- The Dead Girl (1993)
- Fatal Identity (1993)
- Deadly Memories (1995)
Joanne has also published under several pseudonyms including Jo Gibson, Chris Hunter (
Eyes), John Fisher, and Gina Jackson.
She also published the following Regency Romances under the pseudonym Kathryn Kirkwood
- A Match for Melissa
- A Season for Samantha
- A Husband for Holly
- A Valentine for Vanessa
- A Match for Mother (novella)
- A Townhouse for Tessa
- Winter Kittens (novella)